USC-OGP 2-DE database Two-dimensional polyacrylamide gel electrophoresis database

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Searching in 'USC-OGP 2-DE database' for entry matching: VTA1_HUMAN USC-OGP 2-DE database:  VTA1_HUMAN VTA1_HUMAN General information about the entry View entry in simple text format Entry name VTA1_HUMAN Primary accession number Q9NP79 integrated into USC-OGP 2-DE database on  January 17, 2017 (release 1) 2D Annotations were last modified on January 17, 2017 (version 1) General Annotations were last modified on  April 5, 2017 (version 2) Name and origin of the protein Description RecName: Full=Vacuolar protein sorting-associated protein VTA1 homolog; AltName: Full=Dopamine-responsive gene 1 protein; Short=DRG-1; AltName: Full=LYST-interacting protein 5; Short=LIP5; AltName: Full=SKD1-binding protein 1; Short=SBP1;. Gene name Name=VTA1 Synonyms=C6orf55 ORFNames=HSPC228, My012 Annotated species Homo sapiens (Human) [TaxID: 9606] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. References [1]   2D GEL CHARACTERIZATION Author 1., Author 2. Submitted (Mar-2011) to Current 2D PAGE maps for identified proteins How to interpret a protein UVEAL_MELANOMA_3-10 {UVEAL MELANOMA 3-10} Homo sapiens (Human)   map experimental info   UVEAL_MELANOMA_3-10 MAP LOCATIONS: SPOT OGP-1207: pI=6.04; Mw=38036 Cross-references UniProtKB/Swiss-Prot Q9NP79; VTA1_HUMAN. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 0.0 Entry name VTA1_HUMAN Primary accession number Q9NP79 Secondary accession number(s) B4DW55 E1P594 E7ETQ7 Q5TGM1 Q6IAE8 Q9H0R2 Q9H3K9 Q9P0Q0 Sequence was last modified on  October 1, 2000 (version 1) Annotations were last modified on  March 15, 2017 (version 139) Name and origin of the protein Description RecName: Full=Vacuolar protein sorting-associated protein VTA1 homolog; AltName: Full=Dopamine-responsive gene 1 protein; Short=DRG-1; AltName: Full=LYST-interacting protein 5; Short=LIP5; AltName: Full=SKD1-binding protein 1; Short=SBP1; Gene name Name=VTA1 Synonyms=C6orf55 ORFNames=HSPC228, My012 Encoded on Name=VTA1; Synonyms=C6orf55; ORFNames=HSPC228, My012 Keywords 3D-structure; Acetylation; Alternative splicing; Complete proteome; Cytoplasm; Direct protein sequencing; Endosome; Membrane; Polymorphism; Protein transport; Reference proteome; Transport. Copyright Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL AF271994; AAF76210.1; -; mRNA EMBL AF060225; AAG43125.1; ALT_FRAME; mRNA EMBL AF151062; AAF36148.1; ALT_FRAME; mRNA EMBL AL136684; CAB66619.1; -; mRNA EMBL AK000051; BAA90909.1; -; mRNA EMBL AK301376; BAG62917.1; -; mRNA EMBL CR457207; CAG33488.1; -; mRNA EMBL AL033522; CAI21072.1; -; Genomic_DNA EMBL CH471051; EAW47883.1; -; Genomic_DNA EMBL CH471051; EAW47885.1; -; Genomic_DNA EMBL BC005937; AAH05937.1; -; mRNA EMBL BC006989; AAH06989.1; -; mRNA EMBL BC022536; AAH22536.1; -; mRNA CCDS CCDS5197.1; -. [Q9NP79-1]; . CCDS CCDS69214.1; -. [Q9NP79-2]; . RefSeq NP_001273300.1; NM_001286371.1; . RefSeq NP_001273301.1; NM_001286372.1. [Q9NP79-2]; . RefSeq NP_057569.2; NM_016485.4. [Q9NP79-1]; . UniGene Hs.431367; -; . PDB 2LXL; NMR; -; A=1-183 PDB 2LXM; NMR; -; A=1-168 PDB 4TXP; X-ray; 3.01 A; A/B/C=1-162 PDB 4TXQ; X-ray; 2.21 A; A/B=1-162 PDB 4TXR; X-ray; 1.00 A; A=1-162 PDB 4U7E; X-ray; 1.60 A; B=1-162 PDBsum 2LXL; -; . PDBsum 2LXM; -; . PDBsum 4TXP; -; . PDBsum 4TXQ; -; . PDBsum 4TXR; -; . PDBsum 4U7E; -; . ProteinModelPortal Q9NP79; -; . SMR Q9NP79; -; . BioGrid 119595; 40; . IntAct Q9NP79; 23; . MINT MINT-1438279; -; . STRING 9606.ENSP00000356602; -; . iPTMnet Q9NP79; -; . PhosphoSitePlus Q9NP79; -; . SwissPalm Q9NP79; -; . DMDM 30580379; -; . EPD Q9NP79; -; . MaxQB Q9NP79; -; . PaxDb Q9NP79; -; . PeptideAtlas Q9NP79; -; . PRIDE Q9NP79; -; . DNASU 51534; -; . Ensembl ENST00000367630; ENSP00000356602; ENSG00000009844. [Q9NP79-1]; . Ensembl ENST00000452973; ENSP00000395767; ENSG00000009844. [Q9NP79-2]; . GeneID 51534; -; . KEGG hsa:51534; -; . UCSC uc003qiw.5; human. [Q9NP79-1]; . CTD 51534; -; . DisGeNET 51534; -; . GeneCards VTA1; -; . H-InvDB HIX0006262; -; . HGNC HGNC:20954; VTA1; . HPA HPA030968; -; . HPA HPA030969; -; . MIM 610902; gene; . neXtProt NX_Q9NP79; -; . OpenTargets ENSG00000009844; -; . PharmGKB PA162408932; -; . eggNOG KOG0917; Eukaryota; . eggNOG ENOG4111H3M; LUCA; . GeneTree ENSGT00390000011342; -; . HOGENOM HOG000265547; -; . HOVERGEN HBG050907; -; . InParanoid Q9NP79; -; . KO K12199; -; . OMA REPVVAY; -; . OrthoDB EOG091G0QW9; -; . PhylomeDB Q9NP79; -; . TreeFam TF105917; -; . Reactome R-HSA-162588; Budding and maturation of HIV virion; . Reactome R-HSA-917729; Endosomal Sorting Complex Required For Transport (ESCRT); . GeneWiki VTA1; -; . GenomeRNAi 51534; -; . PRO PR:Q9NP79; -; . Proteomes UP000005640; Chromosome 6; . Bgee ENSG00000009844; -; . CleanEx HS_VTA1; -; . ExpressionAtlas Q9NP79; baseline and differential; . Genevisible Q9NP79; HS; . GO GO:0005829; C:cytosol; IDA:UniProtKB; . GO GO:0010008; C:endosome membrane; IEA:UniProtKB-SubCell; . GO GO:0070062; C:extracellular exosome; IDA:UniProtKB; . GO GO:0043231; C:intracellular membrane-bounded organelle; IDA:HPA; . GO GO:0005654; C:nucleoplasm; IDA:HPA; . GO GO:0008022; F:protein C-terminus binding; IPI:UniProtKB; . GO GO:0016197; P:endosomal transport; TAS:Reactome; . GO GO:1904903; P:ESCRT III complex disassembly; NAS:ParkinsonsUK-UCL; . GO GO:0016236; P:macroautophagy; NAS:ParkinsonsUK-UCL; . GO GO:0036258; P:multivesicular body assembly; NAS:ParkinsonsUK-UCL; . GO GO:0071985; P:multivesicular body sorting pathway; IMP:UniProtKB; . GO GO:0015031; P:protein transport; IEA:UniProtKB-KW; . GO GO:0046755; P:viral budding; IMP:UniProtKB; . GO GO:0019058; P:viral life cycle; TAS:Reactome; . Gene3D 1.25.40.270; -; 1; . InterPro IPR023175; VPS_Vta1/CALS_N-dom; .

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